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ENH: preliminary Conda environment file for CHPv5 process
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pebert committed Sep 5, 2017
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22 changes: 22 additions & 0 deletions conda_env/chpv5.yml
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name: CHPv5
channels:
- conda-forge
- bioconda
- r
dependencies:
- python=2.7.13
- sambamba=0.6.6
- bedtools=2.26.0
- deeptools=2.5.3
- macs2=2.1.1.20160309
- r-base=3.3.2
- r-rcpp=0.12.8
- r-devtools=1.13.2
- r-r.utils
- r-optparse
- bioconductor-genomicranges=1.26.4
- bioconductor-rsamtools=1.26.1
# most recent version of histoneHMM 1.7 not available via Bioconda
# Install manually:
# options("unzip"="internal")
# devtools::install_github("matthiasheinig/histoneHMM")

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