fix fastq path

MPIBR-Bioinformatics · Feb 5, 2019 · 1b1d096 · 1b1d096
1 parent d05a170
commit 1b1d096
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/batchAlignment.pl b/batchAlignment.pl
@@ -102,7 +102,7 @@ ($$$$$)
 
     foreach my $tag (sort keys %{$batch_job->{"file"}{"fastq"}})
     {
-        my $file_fastq = $batch_job->{"path"}{"fastq"} . "/" . $batch_job->{"file"}{"fastq"}{$tag};
+        my $file_fastq = $batch_job->{"file"}{"fastq"}{$tag};
         my $file_bam = $batch_job->{"path"}{"bam"} . "/" . $batch_job->{"file"}{"bam"}{$tag};
         my $file_log = $batch_job->{"path"}{"log"} . "/" . $batch_job->{"file"}{"log"}{$tag};
         print "echo $tag\n";