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@MPIBR-Bioinformatics

MPI Brain Bioinformatic Tools

Tools for processing next generation sequencing data

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  1. parseGeneBankFile parseGeneBankFile Public

    Parse GeneBank protein file to extract annotation information

    Perl

  2. PASSFinder PASSFinder Public

    cluster PolyA supported sites from 3'End sequencing

    C

  3. GOAnalysis GOAnalysis Public

    Perform gene ontology analysis of two unrancked lists.

    Perl

  4. AtypicalNeuroNGlycans AtypicalNeuroNGlycans Public

    Matlab

  5. NeuroUTRs NeuroUTRs Public

    Diversity, usage and properties of mRNA 3'UTR isoforms in neuronal compartments

    Matlab

  6. LTP-transcriptomics LTP-transcriptomics Public

    Protocol for the bioinformatics analysis of the LTP transcriptomics project

    Matlab

Repositories

Showing 10 of 12 repositories
  • NeuroUTRs Public

    Diversity, usage and properties of mRNA 3'UTR isoforms in neuronal compartments

    MPIBR-Bioinformatics/NeuroUTRs’s past year of commit activity
    Matlab 0 0 1 0 Updated Jun 27, 2022
  • CodonUsage Public
    MPIBR-Bioinformatics/CodonUsage’s past year of commit activity
    Matlab 0 LGPL-3.0 0 0 0 Updated May 4, 2020
  • SBatchGenerator Public archive

    batch run for cellranger count

    MPIBR-Bioinformatics/SBatchGenerator’s past year of commit activity
    Perl 0 0 0 0 Updated Feb 5, 2019
  • MetaGeneView Public

    create a Genome Browser Track of linearised genomic coverage (removing introns).

    MPIBR-Bioinformatics/MetaGeneView’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Dec 13, 2018
  • GOAnalysis Public

    Perform gene ontology analysis of two unrancked lists.

    MPIBR-Bioinformatics/GOAnalysis’s past year of commit activity
    Perl 0 0 0 0 Updated Dec 3, 2018
  • brainseq Public
    MPIBR-Bioinformatics/brainseq’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 5, 2018
  • PASSFinder Public

    cluster PolyA supported sites from 3'End sequencing

    MPIBR-Bioinformatics/PASSFinder’s past year of commit activity
    C 0 GPL-3.0 0 1 0 Updated Sep 13, 2018
  • pymol-install Public

    PyMol installation instructions

    MPIBR-Bioinformatics/pymol-install’s past year of commit activity
    0 0 0 0 Updated Sep 22, 2017
  • PASSAnnotator Public

    Annotates Poly(A) supported sites to RefSeq annotation

    MPIBR-Bioinformatics/PASSAnnotator’s past year of commit activity
    Perl 0 0 0 0 Updated May 20, 2017
  • LTP-transcriptomics Public

    Protocol for the bioinformatics analysis of the LTP transcriptomics project

    MPIBR-Bioinformatics/LTP-transcriptomics’s past year of commit activity
    Matlab 0 0 0 0 Updated Mar 31, 2017
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