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BrainATUMtome/README.md
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| # ATUMtomeUI | |
| User interface to drive automated tape collecting ultramicrotome | |
| ## Tape | |
| [motor](https://www.maxonmotor.de/maxon/view/service_search?query=372161) | |
| [driver](https://www.maxonmotor.de/maxon/view/product/control/Positionierung/390438) | |
| [tension motor](http://shop.sdp-si.com/catalog/product/?id=A%203Z16-0020C) | |
| ## Parameters | |
| ### Microtome (UC7) | |
| * Cutting speed [mm/s] 0.1 – 2 | |
| * Cutting thickness (feed) [µm] 0.025 – 300 | |
| * Start/Stop cutting Motor off/on | |
| * Counter window (nb cuts since start of series) - | |
| * Total specimen advance (or advance left) [µm] 0-200 µm | |
| * Return speed [mm/s] ?? (before: low, medium, high), I will try to figure out the real values | |
| * Cutting window Start/end of cutting window | |
| * N/S motor movement [µm] Relative movement (0.1 – 500) | |
| * E/W motor movement [µm] Relative movement (0.1 – 500) | |
| ### Camera | |
| * Live-image | |
| * gain | |
| * exposure time | |
| * ROI | |
| * Snapshot | |
| * Video recording | |
| ### Water pump | |
| * 1 button to activate pump | |
| * Dispersed volume/activation: ?? (I will figure it out and send you the values) | |
| ### Tape mechanism | |
| * Tape speed: 0.1 – 2 mm/s (calibration required!!) | |
| * Start/stop tape motors | |
| * Tape tension: support motors on/off | |
| ## Implementation | |
| ### Classes | |
| * MainWindow (controller) | |
| * DriverVideoStream | |
| * DriverMicrotome | |
| * DriverWaterPump | |
| * DriverTapeMechanism | |
| ### Virtual class driver | |
| * DriverAbstract | |
| * isRunning() | |
| * Start() | |
| * Stop() | |
| * Trigger() | |
| ## Drawing a rectangle for ROI | |
| ### Classes | |
| * QGraphicsObject | |
| * QPen | |
| * QPainter | |
| * QGraphicsScene | |
| * QGraphicsSceneMouseEvent | |
| * QRectF | |
| ## Reference readings | |
| Maxon motor [EPOS2](http://www.optolab.ti.bfh.ch/wiki/_media/huce:roboticslab:tutorials:maxonmotor:epos_studio_exercises.pdf) tutorial | |
| ### Maxon Motors | |
| * BOTTOM = USB0 | |
| * TOP = USB1 | |
| ### Digital Outputs | |
| * GREEN LIGHT = USB0, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13 | |
| * SOUND = USB0, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12 | |
| * SUPPORT MOTORS = USB1, 0x0003, DIC_GENERAL_PURPOSE_C, PIN13 | |
| * RED LIGHT = USB1, 0x0004, DIC_GENERAL_PURPOSE_D, PIN12 | |