Rename logfiles from .out to .log

donald · Sep 13, 2022 · 3620e72 · 3620e72
1 parent 8eb42b3
commit 3620e72
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh
@@ -49,7 +49,7 @@ submit() {
 			echo "no _2.fastq file for $f1"
 			continue
 		fi
-		"${MXQSUB[@]}" --stdout "$log_dir/$id.out" "$0" --execute "$id" "$f1" "$f2"
+		"${MXQSUB[@]}" --stdout "$log_dir/$id.log" "$0" --execute "$id" "$f1" "$f2"
 	done
 
 	# input files "blabla_R1_001.fastq" , ""blabla_R2_001.fastq"
@@ -66,7 +66,7 @@ submit() {
 			echo "no _R2_001.fastq file for $f1"
 			continue
 		fi
-		"${MXQSUB[@]}" --stdout "$log_dir/$id.out" "$0" --execute "$id" "$f1" "$f2"
+		"${MXQSUB[@]}" --stdout "$log_dir/$id.log" "$0" --execute "$id" "$f1" "$f2"
 	done
 }