Skip to content
Permalink
5b12512513
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?

JupyterSetup/README.md

Go to file
@arndt
arndt some changes
Latest commit 01a346e Dec 17, 2020 History
1 contributor

Users who have contributed to this file

On compute server (e.g. elcattivo) On your local machine at home to install the R kernel for more customization ssh config htop config
66 lines (48 sloc) 1.12 KB
Raw Blame

On compute server (e.g. elcattivo)

If you used and customized jupyter (notebook/lab before) save your current enviornment first: mv ~/.jupyter ~/.jupyter.v0.

Then simply type the following

tmux new

jupyter-lab --no-browser --port=NNNNN --ip=\*

On your local machine at home

generate a tunnel through ssh:

ssh -L 8888:elcattivo:NNNNN -l user -J geniux.molgen.mpg.de elcattivo

monitor the machine using

htop
htop -u $USER

and point your local browser (firefox) to localhost:8888.

to install the R kernel

run this in an R session:

install.packages("devtools")
devtools::install_github("IRkernel/IRkernel")
IRkernel::installspec()

for more customization

run

jupyter-lab --generate-config

and edit the generated config file.

ssh config

configure ssh with your own .ssh/config file:

Host tunnel
        HostName elcattivo
        User UUUUUUUU
        ProxyJump geniux.molgen.mpg.de
        LocalForward 8888 elcattivo:NNNNN

then it suffices to run ssh tunnel.

htop config

copy the in this dir:

mkdir -p ~/.config/htop
cp htoprc ~/.config/htop/