README.md

### On compute server (e.g. elcattivo)
If you used and customized jupyter (notebook/lab before) save your current enviornment first:
`mv ~/.jupyter ~/.jupyter.v0`.

Then simply type the following
```
tmux new

jupyter-lab --no-browser --port=NNNNN --ip=\*
```



### On your local machine at home
generate a tunnel through ssh:
```
ssh -L 8888:elcattivo:NNNNN -l user -J geniux.molgen.mpg.de elcattivo
```
monitor the machine using 
```
htop
htop -u $USER
```

and point your local browser (firefox) to `localhost:8888`.


### to install the R kernel 
run this in an R session:
```
install.packages("devtools")
devtools::install_github("IRkernel/IRkernel")
IRkernel::installspec()
```




### for more customization 
run
```
jupyter-lab --generate-config
```
and edit the generated config file.


### ssh config
configure ssh with your own `.ssh/config` file:

```
Host tunnel
        HostName elcattivo
        User UUUUUUUU
        ProxyJump geniux.molgen.mpg.de
        LocalForward 8888 elcattivo:NNNNN
```

then it suffices to run `ssh tunnel`.


### htop config
copy the in this dir:
```
mkdir -p ~/.config/htop
cp htoprc ~/.config/htop/
```