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require forgi version 1.1, fix #1, bump to version 1.0.8
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heller committed Apr 9, 2020
1 parent cfa3231 commit a402a93
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions setup.py
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long_description = """RNA-binding proteins (RBPs) play a vital role in the post-transcriptional control of RNAs. They are known to recognize RNA molecules by their nucleotide sequence as well as their three-dimensional structure. ssHMM is an RNA motif finder that combines a hidden Markov model (HMM) with Gibbs sampling to learn the joint sequence and structure binding preferences of RBPs from high-throughput RNA-binding experiments, such as CLIP-Seq. The model can be visualized as an intuitive graph illustrating the interplay between RNA sequence and structure."""

setup(name='sshmm',
version='1.0.7',
version='1.0.8',
description='A sequence-structure hidden Markov model for the analysis of RNA-binding protein data.',
long_description=long_description,
url='https://github.molgen.mpg.de/heller/ssHMM',
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packages=['sshmm'],
package_data={'sshmm': ['img/*.png'],},
zip_safe=False,
install_requires=['numpy', 'graphviz', 'pygraphviz', 'weblogo', 'future', 'logging_exceptions', 'forgi'],
install_requires=['numpy', 'graphviz', 'pygraphviz', 'weblogo', 'future', 'logging_exceptions', 'forgi==1.1'],
scripts=['bin/preprocess_dataset', 'bin/train_seqstructhmm', 'bin/batch_seqstructhmm', 'bin/draw_model_graph'],
ext_modules = [Extension("cEstimate", ["sshmm/cEstimate.c"])])

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