v1.0.7

Stable version 1.0.7

Changelog:

• fixed illogical parameter --baum_welch in train_seqstructhmm

v1.0.6

Stable version 1.0.6

Changelog:

• made preprocess_dataset script more easy to use

v1.0.5

v1.0.5

Stable version 1.0.5

Changelog:

• fix a logging bug in preprocess_dataset
• add draw_model_graph script which regenerates a model graph png from a model file XML

v1.0.4

v1.0.4

Stable version 1.0.4

Changelog:

• add two packages to setup.py that new forgi version requires

v1.0.3

v1.0.3

Stable version 1.0.3

Changelog:

• Several improvements to the preprocess_dataset script:
  • awk is not required anymore
  • add -s option: skip the check for dependencies
  • remove binding sites with unknown chromosomes immediately in first filtering step
  • fix problem with dependency check for RNAstructure

v1.0.2

v1.0.2

Stable version 1.0.2

Changelog:

• fix errors in help string of preprocess_dataset
• don't throw error when awk variant other than gawk is used

v1.0.1

v1.0.1

Stable version 1.0.1

Changelog:

• add elongation span parameter to preprocess_dataset script (specifies how much original binding sites are elongated for improved secondary structure prediction)
• improve output and error handling of preprocess_dataset script
• limit number of predicted RNAshapes to 10 for each nucleotide sequence

Stable release 1.0.0

v1.0.0

Stable version 1.0.0