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Moved example to top
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jenzopr committed Jul 3, 2015
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24 changes: 13 additions & 11 deletions LimiTT.xml
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<help>



.. class:: infomark

**See LimiTT in action**

Browse to the shared data library to load example files for LimiTT into galaxy.
The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014).
To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline.
Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway".
Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action.

------------

.. class:: infomark

**Input Files:**
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|

------------

.. class:: infomark

**See LimiTT in action**

Browse to the shared data library to load example files for LimiTT into galaxy.
The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014).
To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline.
Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway".
Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action.
</help>
<citations>
<citation type="doi">10.1093/database/bar009</citation>
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