Update Readme

README.md

@@ -82,16 +82,16 @@ Optional arguments:
 	--motif_max_len INT	Maximum length of Motif (Default: 20)
 	--interation INT	Number of iterations done by glam2. More Interations: better results, higher runtime. (Default: 10000)
 	--tomtom_treshold float	Threshold for similarity score. (Default: 0.01)
-
-    Motif clustering:
+	
+	Motif clustering:
 	--edge_weight INT Minimum weight of edges in motif-cluster-graph (Default: 5)
-    --motif_similarity_thresh FLOAT threshold for motif similarity score (Default: 0.00001)
+        --motif_similarity_thresh FLOAT threshold for motif similarity score (Default: 0.00001)
 
-    Creating GTF:
-    --tissues STRING Filter for tissue/category activity categorys as in JSON config (Default: None)
-    --wd PATH current working directory for the script (default: ".")
-    --dir PATH directory for saved Ensembl / UCSC file (default: "./data/")
-    --out PATH directory for the output GTF (default: ".")
+        Creating GTF:
+        --tissues STRING Filter for tissue/category activity categorys as in JSON config (Default: None)
+        --wd PATH current working directory for the script (default: ".")
+        --dir PATH directory for saved Ensembl / UCSC file (default: "./data/")
+        --out PATH directory for the output GTF (default: ".")
     
 All arguments can be set in the configuration files.
  ```