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Dev #79

Merged
merged 12 commits into from
Jan 21, 2019
Merged

Dev #79

merged 12 commits into from
Jan 21, 2019

Commits on Jan 16, 2019

  1. corrected the wrong stats output of number of footprints after filter 

    wrong file was chosen. filtered_flagged.bed is the corresct one instead of filtered.bed
    @JannikHamp
    JannikHamp committed Jan 16, 2019
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Commits on Jan 18, 2019

  1. this should fix the 1 off count of footprins discrepacy 

    The input file $data might still have or have not the header, thus it is checked.
The file "filtered_flagged.bed" however has no header, thus no check needs to be made.
    @JannikHamp
    JannikHamp committed Jan 18, 2019
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  2. Merge pull request #75 from loosolab/JannikHamp-patch-4 

    corrected the wrong stats output of number of footprints after filter
    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  3. README: Updated demo

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  4. pipeline.nf: Update help message

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  5. Merge branch 'dev' into estimation_motifs

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  6. README: parameter update

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  7. get_motif_seq.R: fixed bug mentioned in #77

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  8. pipeline.nf: Added errorStrategy 'finish' to process createGTF; Minor… 

    … changes in help message
    @renewiegandt
    renewiegandt committed Jan 18, 2019
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  9. Added known tfbs sites for demo run

    @renewiegandt
    renewiegandt committed Jan 18, 2019
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Commits on Jan 19, 2019

  1. README: Fixed typos

    @renewiegandt
    renewiegandt committed Jan 19, 2019
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  2. Merge pull request #78 from loosolab/estimation_motifs 

    Estimation motifs
    @renewiegandt
    renewiegandt committed Jan 19, 2019
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