Added files for container

wilson-basic/.dockerignore

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+.dockerignore
+Dockerfile
+.DS_Store

wilson-basic/Dockerfile

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+FROM rocker/shiny:3.6.1
+LABEL maintainer="Jens Preussner <jens.preussner@mpi-bn.mpg.de>"
+LABEL maintainer="Hendrik Schultheis <hendrik.schultheis@mpi-bn.mpg.de>"
+LABEL maintainer="Carsten Kuenne <carsten.kuenne@mpi-bn.mpg.de>"
+LABEL version="2.1.0"
+
+#
+# Configuration
+#
+ENV \
+    # Define the default location from which the app is served
+    WILSON_LOCATION=/ \
+    # Define the landing page for the app
+    WILSON_LANDING_PAGE=introduction
+
+#
+# Move app and data to container
+#
+COPY . /srv/shiny-server
+
+#
+# Installation procedure
+#
+RUN apt-get update && apt-get install -y \
+    libnlopt-dev \
+    libssl-dev \
+    libxml2-dev \
+    libcurl4-openssl-dev \
+    git \
+    procps \
+    python-pip && \
+    apt-get clean && \
+    # Install jinja2 templating engine
+    pip install j2cli && \
+    # Install R infrastructure
+    R -e "install.packages(c('BiocManager', 'webshot'), repos = c(CRAN = 'https://cloud.r-project.org/'))" && \
+    R -e "webshot::install_phantomjs()" && \
+    R -e "BiocManager::install(c('shinyBS', 'shinydashboard', 'shinythemes', 'htmltools', 'wilson'))" && \
+    cp /root/bin/phantomjs /usr/local/bin && \
+    # Move entrypoint, create log directory
+    mv /srv/shiny-server/entrypoint.sh / && \
+    mkdir /srv/shiny-server/logs && \
+    # Change ownerships
+    chmod -R ugo+wrX /var/log/shiny-server/ && \
+    chown -R shiny:shiny /srv/shiny-server/ && \
+    # Clean up existing sample apps
+    rm -rf /srv/shiny-server/[0-9][0-9]_* /srv/shiny-server/index.html /srv/shiny-server/sample-apps
+
+# Start container
+USER shiny
+ENTRYPOINT ["/entrypoint.sh", "/usr/bin/shiny-server.sh"]

wilson-basic/entrypoint.sh

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+#!/bin/bash -e
+j2 /srv/shiny-server/shiny-server.conf.j2 > /srv/shiny-server/shiny-server.conf
+
+exec "$@"

wilson-basic/shiny-server.conf.j2

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+# Define the user we should use when spawning R Shiny processes
+run_as shiny;
+
+# Preserve logging, although the main process exits with status 0
+preserve_logs true;
+
+# Enable detailed error messages for users
+sanitize_errors off;
+
+# Define a top-level server which will listen on a port
+server {
+  # Instruct this server to listen on port 3838
+  listen 3838;
+
+  # Define the location available at the base URL
+  location {{ "WILSON_LOCATION"|env("/") }} {
+
+    # Run this location in 'site_dir' mode, which hosts the entire directory
+    # tree at '/srv/shiny-server'
+    site_dir /srv/shiny-server;
+
+    # Define where we should put the log files for this location
+    log_dir /var/log/shiny-server;
+
+    # Should we list the contents of a (non-Shiny-App) directory when the user 
+    # visits the corresponding URL?
+    directory_index on;
+  }
+}