Merge branch 'gpl'

* gpl: updated and inserted GPL header COPYING: added GPLv3+ license file
mariux64 · Jul 21, 2011 · 7b6af3b · 7b6af3b
2 parents 2f9a3e6 + 2ddd6a8
commit 7b6af3b
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diff --git a/COPYING b/COPYING
diff --git a/src/bee-check.sh.in b/src/bee-check.sh.in
@@ -1,13 +1,17 @@
 #!/bin/bash
 #
 # bee-check - check consistancy of installed bee-pkgs
-# Copyright (C) 2009-2010
+#
+# Copyright (C) 2009-2011
 #       Marius Tolzmann <tolzmann@molgen.mpg.de>
 #       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
 #
-# This program is free software: you can redistribute it and/or modify
+# bee is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 2 of the License, or
+# the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 #
 # This program is distributed in the hope that it will be useful,

diff --git a/src/bee-init.sh.in b/src/bee-init.sh.in
@@ -1,4 +1,28 @@
 #!/bin/bash
+#
+# bee-init - initialize bee-files from source-urls
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+
 set -e
 
 if [ -z ${BEE_VERSION} ] ; then

diff --git a/src/bee-install.sh.in b/src/bee-install.sh.in
@@ -1,11 +1,15 @@
 #!/bin/bash
 #
 # bee-install - install a bee-pkg
-# Copyright (C) 2009-2010
-#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#
+# Copyright (C) 2009-2011
 #       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
 #
-# This program is free software: you can redistribute it and/or modify
+# bee is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.

diff --git a/src/bee-list.sh.in b/src/bee-list.sh.in
@@ -1,12 +1,17 @@
 #!/bin/bash
 #
-# bee-list 2009-2011
-#   by Marius Tolzmann and Tobias Dreyer {tolzmann,dreyer}@molgen.mpg.de
-#     Max Planck Institute for Molecular Gentics Berlin Dahlem
+# bee-list - list bee packages
 #
-# This program is free software; you can redistribute it and/or modify
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2 of the License, or
+# the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 #
 # This program is distributed in the hope that it will be useful,
@@ -15,9 +20,7 @@
 # GNU General Public License for more details.
 #
 # You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
-# MA 02110-1301, USA.
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
 #
 
 if [ -z ${BEE_VERSION} ] ; then

diff --git a/src/bee-query.sh.in b/src/bee-query.sh.in
@@ -1,11 +1,15 @@
 #!/bin/bash
 #
 # bee-query - query bee metadata
-# Copyright (C) 2009-2010
-#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#
+# Copyright (C) 2009-2011
 #       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
 #
-# This program is free software: you can redistribute it and/or modify
+# bee is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.

diff --git a/src/bee-remove.sh.in b/src/bee-remove.sh.in
@@ -1,4 +1,27 @@
 #!/bin/bash
+#
+# bee-remove - remove a installed bee-pkg
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 if [ -z ${BEE_VERSION} ] ; then
     echo >&2 "BEE-ERROR: please call $0 from bee .."

diff --git a/src/bee.sh.in b/src/bee.sh.in
@@ -1,4 +1,27 @@
 #!/bin/bash
+#
+# bee - wrapper script for the various bee-tools
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 BEE_VERSION="@BEE_VERSION@"
 

diff --git a/src/beecut/beecut.c b/src/beecut/beecut.c
@@ -1,11 +1,16 @@
 /*
 ** beecut - split strings
-** Copyright (C) 2010-2011
+**
+** Copyright (C) 2009-2011
 **       Marius Tolzmann <tolzmann@molgen.mpg.de>
+**       Tobias Dreyer <dreyer@molgen.mpg.de>
+**       and other bee developers
+**
+** This file is part of bee.
 **
-** This program is free software; you can redistribute it and/or modify
+** bee is free software; you can redistribute it and/or modify
 ** it under the terms of the GNU General Public License as published by
-** the Free Software Foundation; either version 3 of the License, or
+** the Free Software Foundation, either version 3 of the License, or
 ** (at your option) any later version.
 **
 ** This program is distributed in the hope that it will be useful,
@@ -38,7 +43,7 @@
 void print_version(void)
 {
     printf("beecut v%d.%d.%d - "
-           "by Marius Tolzmann <tolzmann@molgen.mpg.de> 2010-2011\n",
+           "by Marius Tolzmann <tolzmann@molgen.mpg.de> 2009-2011\n",
              BEECUT_MAJOR, BEECUT_MINOR, BEECUT_PATCHLVL);
 }
 

diff --git a/src/beefind.pl b/src/beefind.pl
@@ -1,4 +1,28 @@
 #!/usr/bin/perl -w
+#
+# beefind.pl - find files and calculate their md5sums
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+
 
 use Data::Dumper;
 use File::Find;

diff --git a/src/beelib.config.sh.in b/src/beelib.config.sh.in
@@ -1,4 +1,27 @@
 #!/bin/bash
+#
+# config-lib - bash-function-library
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 function config_init_colors() {
     if [ -t 1 ] ; then

diff --git a/src/beesep/beesep.c b/src/beesep/beesep.c
@@ -1,3 +1,28 @@
+/*
+** beesep - split beefind output
+**
+** Copyright (C) 2009-2011
+**       David Fessler <dfessler@uni-potsdam.de>
+**       Marius Tolzmann <tolzmann@molgen.mpg.de>
+**       Tobias Dreyer <dreyer@molgen.mpg.de>
+**       and other bee developers
+**
+** This file is part of bee.
+**
+** bee is free software; you can redistribute it and/or modify
+** it under the terms of the GNU General Public License as published by
+** the Free Software Foundation, either version 3 of the License, or
+** (at your option) any later version.
+**
+** This program is distributed in the hope that it will be useful,
+** but WITHOUT ANY WARRANTY; without even the implied warranty of
+** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+** GNU General Public License for more details.
+**
+** You should have received a copy of the GNU General Public License
+** along with this program; if not, see <http://www.gnu.org/licenses/>.
+*/
+
 #include <stdio.h>
 #include <stdlib.h>
 #include <ctype.h>

diff --git a/src/beesh.d/autogen.sh b/src/beesh.d/autogen.sh
@@ -1,3 +1,26 @@
+#
+# bee magic for autogen.sh
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 if [ ! -x ${S}/autogen.sh ] ; then
     return

diff --git a/src/beesh.d/cmake.sh b/src/beesh.d/cmake.sh
@@ -1,3 +1,26 @@
+#
+# bee magic for cmake
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 if [ ! -r ${S}/CMakeLists.txt ] ; then
     return

diff --git a/src/beesh.d/configure.sh b/src/beesh.d/configure.sh
@@ -1,3 +1,26 @@
+#
+# bee magic for configure
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
 
 if [ ! -x ${S}/configure ] ; then
     return