Computing enrichments, similarities, and counts ...
Many features in CoNekT rely on pre-populating tables with data. This allows search functions to quickly filter on certain terms.
Computing Counts
After building or extending a database updating counts is crucial for several features to work. In 'Build' click on 'Update Counts' to start this process.
Other things to pre-calculate are :
Clade Assignments : 'Build'->'Assign Clades' GO summaries for families : 'Build'->'Family-wise annotation' Reconsiliated Tree : 'Build'->'Reconsile Trees' Expression Context Conservation (ECC) : 'Build'->'Expression Context Conservation (ECC)'
Similarities between co-expression clusters : 'Build'->'Cluster Similarities' GO Enrichment for co-expression clusters : 'Build'->'Cluster GO Enrichment' Predict GO labels from the network : 'Build'->'Predict GO from Neighborhood'
Note that if any of these are missing the corresponding features in the DB will simply be disabled.