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proost committed Dec 4, 2017
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20 changes: 19 additions & 1 deletion docs/tutorials/002_expression_profiles.md
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Expand Up @@ -16,10 +16,28 @@ Furthermore, summarized profiles with fewer conditions are available (link below

![expression profile summary](images/expression_profile_summary.png "Expression profile summary example")

The **download** buttons below expression plots allow you to download the raw data
The **download** buttons below expression plots allow you to download the data from the plot in a tab-delimited text file.

Expression profiles can be compared between genes from the same species. From the tools menu select **Compare profiles**
in the Expression profiles section. On the next page select the species, enter gene identifiers and select if normalization
should be used (recommended). Click **Show profiles** to get a single plot including multiple genes.

![expression profile comparison](images/expression_profile_comparison.png "Expression profile comparison example")


## Heatmaps

While comparing expression profiles is limited to 50 genes, heatmaps can be used to compare larger sets of genes within
one species, or between species.

The tool to create heatmaps is located in the tools menu, **Create heatmap** in the expression profile section. First
select the correct tab, the default comparison will use all annotated condition but only allows genes from a single species
to be included. The Comparative heatmap allows comparisons between multiple species, but only for a limited set of conditions.


![heatmap entry](images/heatmap_entry.png "Heatmap form")


## Expression Specificity

## Export *all* expressed genes
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