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changed package name
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@proost
proost committed Oct 27, 2017
1 parent db6cbb0 commit 170b47692bdbe2133e8ca9b99f8cc40742dc1d44
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Showing 321 changed files with 496 additions and 496 deletions.
0 planet/__init__.py → conekt/__init__.py
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138 planet/app.py → conekt/app.py
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@@ -18,7 +18,7 @@ from flask_admin.menu import MenuLink
from flask_login import current_user
from flask_admin import Admin

from planet.extensions import toolbar, db, login_manager, cache, htmlmin, blast_thread, compress, whooshee, migrate
from conekt.extensions import toolbar, db, login_manager, cache, htmlmin, blast_thread, compress, whooshee, migrate


def create_app(config):
@@ -68,7 +68,7 @@ def configure_extensions(app):
if BLAST_ENABLED:
blast_thread.init_app(app)

from planet.models.users import User
from conekt.models.users import User

@login_manager.user_loader
def load_user(user_id):
@@ -81,28 +81,28 @@ def configure_extensions(app):

def configure_blueprints(app):
# Import controllers and register as blueprint
from planet.controllers.main import main
from planet.controllers.auth import auth, no_login
from planet.controllers.blast import blast
from planet.controllers.sequence import sequence
from planet.controllers.species import species
from planet.controllers.go import go
from planet.controllers.interpro import interpro
from planet.controllers.family import family
from planet.controllers.expression_cluster import expression_cluster
from planet.controllers.expression_profile import expression_profile
from planet.controllers.expression_network import expression_network
from planet.controllers.search import search
from planet.controllers.help import help
from planet.controllers.heatmap import heatmap
from planet.controllers.profile_comparison import profile_comparison
from planet.controllers.custom_network import custom_network
from planet.controllers.graph_comparison import graph_comparison
from planet.controllers.clade import clade
from planet.controllers.ecc import ecc
from planet.controllers.specificity_comparison import specificity_comparison
from planet.controllers.admin.controls import admin_controls
from planet.controllers.tree import tree
from conekt.controllers.main import main
from conekt.controllers.auth import auth, no_login
from conekt.controllers.blast import blast
from conekt.controllers.sequence import sequence
from conekt.controllers.species import species
from conekt.controllers.go import go
from conekt.controllers.interpro import interpro
from conekt.controllers.family import family
from conekt.controllers.expression_cluster import expression_cluster
from conekt.controllers.expression_profile import expression_profile
from conekt.controllers.expression_network import expression_network
from conekt.controllers.search import search
from conekt.controllers.help import help
from conekt.controllers.heatmap import heatmap
from conekt.controllers.profile_comparison import profile_comparison
from conekt.controllers.custom_network import custom_network
from conekt.controllers.graph_comparison import graph_comparison
from conekt.controllers.clade import clade
from conekt.controllers.ecc import ecc
from conekt.controllers.specificity_comparison import specificity_comparison
from conekt.controllers.admin.controls import admin_controls
from conekt.controllers.tree import tree

LOGIN_ENABLED = app.config['LOGIN_ENABLED']
BLAST_ENABLED = app.config['BLAST_ENABLED']
@@ -142,50 +142,50 @@ def configure_admin_panel(app):
# Admin panel
LOGIN_ENABLED = app.config['LOGIN_ENABLED']
if LOGIN_ENABLED:
from planet.controllers.admin.views import MyAdminIndexView

from planet.controllers.admin.views.ecc import ECCView
from planet.controllers.admin.views.sequences import AddSequenceDescriptionsView
from planet.controllers.admin.views.expression_profiles import AddExpressionProfilesView
from planet.controllers.admin.views.expression_networks import AddCoexpressionNetworkView
from planet.controllers.admin.views.expression_networks import ExpressionNetworkMethodAdminView
from planet.controllers.admin.views.expression_specificity import AddSpecificityView
from planet.controllers.admin.views.expression_specificity import ConditionTissueAdminView
from planet.controllers.admin.views.expression_specificity import ExpressionSpecificityMethodAdminView
from planet.controllers.admin.views.go_interpro import AddInterProView
from planet.controllers.admin.views.go_interpro import AddGOView
from planet.controllers.admin.views.go_interpro import AddFunctionalDataView
from planet.controllers.admin.views.go_interpro import GOEnrichmentView
from planet.controllers.admin.views.go_interpro import PredictGOView
from planet.controllers.admin.views.families import AddFamiliesView, AddFamilyAnnotationView
from planet.controllers.admin.views.families import GeneFamilyMethodAdminView
from planet.controllers.admin.views.species import AddSpeciesView
from planet.controllers.admin.views.species import SpeciesAdminView
from planet.controllers.admin.views.trees import AddTreesView
from planet.controllers.admin.views.expression_clusters import BuildNeighorhoodToClustersView
from planet.controllers.admin.views.expression_clusters import BuildCoexpressionClustersView
from planet.controllers.admin.views.expression_clusters import AddCoexpressionClustersView
from planet.controllers.admin.views.expression_clusters import ClusterSimilaritiesView
from planet.controllers.admin.views.expression_clusters import CoexpressionClusteringMethodAdminView
from planet.controllers.admin.<