Merge remote-tracking branch 'origin/master'

proost · May 11, 2017 · 9dc8cf5 · 9dc8cf5
2 parents 40c6b98 + 9504f59
commit 9dc8cf5
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/helper/fasta_to_gff.py b/helper/fasta_to_gff.py
@@ -4,7 +4,9 @@
 
 fasta_file = sys.argv[1]
 
-fasta_data = Fasta.readfile(fasta_file)
+fh = Fasta()
 
-for k, s in fasta_data.sequences.items():
-    print('%s\t.\tCDS\t1\t%d\t.\t.\t.\tgene_id "Parent=%s"\n' % (k, len(s), k))
+fh.readfile(fasta_file)
+
+for k, s in fh.sequences.items():
+    print('%s\t.\tCDS\t1\t%d\t.\t.\t.\tParent=%s' % (k, len(s), k))