NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%notin%")
export(above_percentage)
export(add_assay_classification)
export(add_assay_norm)
export(add_coldata_classification)
export(add_coldata_survival)
export(add_exon_order)
export(add_stage_simple)
export(assay_to_model)
export(calc_auc)
export(calc_prediction)
export(calculate_surv_fit)
export(collapse_column)
export(combine_list)
export(correct_output)
export(count_column)
export(drop_unused_levels)
export(extract_mclust)
export(factorize_columns)
export(filter_chromosome)
export(filter_columns_with_na)
export(filter_duplicates)
export(filter_fold_change)
export(filter_for_factor)
export(filter_mean)
export(filter_out_factor)
export(filter_proportion)
export(filter_rare)
export(filter_single_level)
export(filter_small_binary)
export(filter_unimodal)
export(filter_zero)
export(get_active_coef)
export(get_assay)
export(get_coldata)
export(get_no_cores)
export(get_predictors)
export(has_zero_coef)
export(is_class_SE)
export(is_correct)
export(make_SummarizedExperiment)
export(make_coef_matrix)
export(make_coeff_frame)
export(make_model_matrix)
export(make_result_matrix)
export(merge_duplicated)
export(merge_duplicated_columns)
export(merge_duplicated_se)
export(merge_element_metadata)
export(merge_model_matrices)
export(merge_se)
export(methylation_beta_value)
export(methylation_cpg_annotation)
export(not_zero)
export(order_by_column)
export(plot_den)
export(plot_siber)
export(preprocess_assay)
export(preprocess_coldata)
export(rename_margin)
export(reorder_all)
export(reorder_column)
export(rerun_mclust)
export(single_cvglm)
export(sum_is_na)
export(to_string)
export(transform_assay)
export(unnest_dataframe)
export(use_biomart)
export(use_cv_coxglmnet)
export(use_cvglmnet)
export(use_glmnet)
export(use_glmnet_old)
export(use_mclust)
export(use_nested_cvglmnet)
export(use_p_adjust)
export(use_pcr_nv)
export(use_prop_test)
export(use_siber)
export(use_silvermantest)
export(verify_mclust)
import(AUC)
import(EnsDb.Hsapiens.v86)
import(GenomicRanges)
import(SIBERG)
import(SummarizedExperiment)
import(caret)
import(doParallel)
import(dplyr)
import(foreach)
import(glmnet)
import(magrittr)
import(mclust)
import(rlang)
import(survival)
import(survminer)
importFrom(Biobase,isUnique)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(RColorBrewer,brewer.pal)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useMart)
importFrom(caret,confusionMatrix)
importFrom(caret,createFolds)
importFrom(dplyr,all_vars)
importFrom(dplyr,any_vars)
importFrom(dplyr,filter)
importFrom(dplyr,filter_all)
importFrom(dplyr,filter_at)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,na_if)
importFrom(dplyr,ntile)
importFrom(edgeR,calcNormFactors)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(glmnet,predict.glmnet)
importFrom(magrittr,"%>%")
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(plyr,ldply)
importFrom(plyr,revalue)
importFrom(rlang,is_empty)
importFrom(rlist,list.append)
importFrom(rlist,list.cbind)
importFrom(rlist,list.zip)
importFrom(scales,rescale)
importFrom(silvermantest,silverman.test)
importFrom(survAUC,UnoC)
importFrom(survival,Surv)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,drop_na)