methylation_cpg_annotation.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/methylation_cpg_annotation.R
\name{methylation_cpg_annotation}
\alias{methylation_cpg_annotation}
\title{Annotate CpG Sites from Mehtylation Data}
\usage{
methylation_cpg_annotation(
  edb = NULL,
  methylation,
  meth_assay,
  gene_assay,
  genes,
  gene_name,
  exons = NULL,
  ...
)
}
\arguments{
\item{edb}{- Ensembl databank}

\item{methylation}{- SummarizedExperiment}

\item{genes}{- GRanges of genes from edb}

\item{gene_name}{Character - Name of Gene}

\item{exons}{- GRanges of exons from edb}

\item{...}{for promoters}

\item{gene_expression}{- Summarized Experiment}
}
\value{

}
\description{
Short function to add assay to SE.
}
\details{
Function maps CpG Sites to gene locations (exons, introns) but needs to generalize those loci. Meaning that exons are combines by "reduce" and just the order is kept.
every cpg that does not map to those exon or promotor regions is considered to be mapping to an intron instead.
}