plot_heatmap.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot_heatmap.R
\name{plot_heatmap}
\alias{plot_heatmap}
\title{Plot Heatmap}
\usage{
plot_heatmap(summarized_experiment, assay_index = 2,
  column_data = NULL, id = NULL, col_annotation = NULL, ...)
}
\arguments{
\item{id}{Unique ID (i.e. patient); default = "case_id"}

\item{col_annotation}{Either character of column names the Annotation is calculated from or am annotation object.}

\item{...}{further arguments for \link[gplots]{heatmap.2}}

\item{df_expression}{Expression matrix or data frame}

\item{df_meta}{Data frame of meta data}
}
\value{
Returns a large Heatmap object
}
\description{
Plot expression in violin and jitter plots of different factors. Factors are selected if they were significant when tested with catdes by use.catdes. All dots are coloured by  the column "group".
}
\examples{
plot_cluster(lungXY$Expressionmatrix, lungMeta, id = "case_id", col_annotation = c("primary_diagnosis", "stage"), show_column_names = FALSE)
}