Merge branch 'clean_and_fix' of https://github.molgen.mpg.de/EditionO…

…penAccess/EOASkripts into clean_and_fix

eoatex2pdf.py

@@ -7,6 +7,7 @@
 from pathlib import Path
 import logging
 import os
+import sys
 import shutil
 import pathlib
 
@@ -22,30 +23,38 @@ def main(
     check_executable( "xelatex" )
     if( not os.path.exists( output_dir ) ):
         os.makedirs( output_dir )
-    fixed_file_path = Path(output_dir) / input_file
+    input_file = Path( input_file )
+    input_dir = input_file.resolve().parent
+    output_dir = Path( output_dir )
+    fixed_file_path = output_dir / input_file.name
     libeoaconvert.enable_preamble(
             input_file,
             fixed_file_path,
             "pdf"
     )
     copy_dir_overwrite(
-            Path(input_file).parent / "texfiles",
-            Path(output_dir) / "texfiles"
+            input_file.resolve().parent / "texfiles",
+            output_dir / "texfiles"
     )
-
+    output_dir = output_dir.resolve()
+    cwd = Path.cwd()
+    os.chdir( input_dir )
+    logging.info( "cd {}".format( input_dir ) )
     exec_command(
-        f"xelatex --output-directory={output_dir} {fixed_file_path}",
+        f"xelatex --output-directory={output_dir} {input_file.name}",
     )
     exec_command(
-        "biber {}".format( Path(input_file).stem ),
+        "biber {}".format( input_file.stem ),
         wd = output_dir
     )
     exec_command(
-        f"xelatex --output-directory={output_dir} {fixed_file_path}",
+        f"xelatex --output-directory={output_dir} {input_file.name}",
     )
     exec_command(
-        f"xelatex --output-directory={output_dir} {fixed_file_path}",
+        f"xelatex --output-directory={output_dir} {input_file.name}",
     )
+    logging.info( "cd {}".format( cwd ) )
+    os.chdir( cwd )
 
 if __name__ == '__main__':
     parser = argparse.ArgumentParser(
@@ -58,7 +67,8 @@ def main(
     )
     parser.add_argument(
             "-o", "--output-dir",
-            default = "./latex-out"
+            default = "./latex-out",
+            help = "output directory"
     )
     parser.add_argument(
         "-c", "--config",