make.prop.frame.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/make.prop.frame.R
\name{make.prop.frame}
\alias{make.prop.frame}
\title{Test of Proportion}
\usage{
make.prop.frame(df_list, factor_one = "group", factor_two)
}
\arguments{
\item{df_list}{A nested list of meta data obtained by >make.nested.list<}

\item{factor_one}{First grouping factor for function >count.column<}

\item{factor_two}{Second grouping factor for function >count.column<}
}
\value{
Returns a data frame containing all pvalues of the proportion test of all genes.
}
\description{
This function applies >count.column< and >use.prop.test< on the whole list of data frames.
}
\examples{
df <- data.frame(case_id = c(1,2,3,4,5,6), group = c("one","one","two","one","two","three"), primary_diagnosis = c("Squamous cell carcinoma, NOS", "Adenocarcinoma, NOS", "Adenocarcinoma with mixed subtypes", "Squamous cell carcinoma, NOS", "Squamous cell carcinoma, NOS", "Squamous cell carcinoma, NOS"))
diagnosis_counts <- count.column(df, factor_one = "group", factor_two = "primary_diagnosis")
pValues <- use.prop.test(diagnosis_counts, FALSE)
}