-
Notifications
You must be signed in to change notification settings - Fork 0
Local usage:Docker
Running WIlsON using Docker is a very easy and straight-forward way to obtain a private instance of WIlsON.
Having Docker installed, use
docker pull loosolab/wilson
docker run -d -p 3838:3838 loosolab/wilson
To mount cutsom data into the container, make use of Docker's -v
parameter to mount a host directory into the container. Inside the container, WIlsON looks for external datasets in /srv/shiny-server/external_data
. So if you want to place your data sets into local folder /home/test/wilson, you would add parameter "-v '/home/test/wilson':'/srv/shiny-server/external_data'"
to the docker run
call. It is also possible to change the files in /home/test/wilson while the container is running since it automatically detects changes.
docker run -d -v '/home/test/wilson':'/srv/shiny-server/external_data' loosolab/wilson
How to cite?
H. Schultheis, C. Kuenne, J. Preussner, R. Wiegandt, A. Fust, M. Bentsen and M. Looso. WIlsON: Webbased Interactive Omics VisualizatioN. Bioinformatics 35(6) 2018, doi: https://doi.org/10.1093/bioinformatics/bty711
Copyright © 2019 Dr. Mario Looso, Max Planck Institute for Heart and Lung Research