Local usage:R Studio

Run WIlsON in RStudio

The WIlsON-App relies a lot on functionality from the WIlsON R package. Before using the app, make sure to install the package, e.g. with

install.packages("BiocManager")
BiocManager::install("wilson")

Now either clone the WIlsON apps repository and use shiny::runApp():

# Switch with setwd into the main folder e.g. wilson-apps.
setwd('yourPath'/wilson-apps)
# Use runApp to run the desired app. E.g. for wilson-basic
shiny::runApp("wilson-basic/")

Or use shiny::runUrl():

shiny::runUrl("https://github.molgen.mpg.de/loosolab/wilson-apps/archive/master.zip", subdir = "/wilson-basic")

Note In case you are on a Windows-based system, Rtools is needed for downloading plots. Make sure to add Rtools to Systempath during installation.

Using custom data

Add you custom data files into the wilson-basic/data folder. After restarting the app, the new dataset can be selected from the apps drop down menue in the feature selection pane.