Skip to content

Local usage:R Studio

Jens Preussner edited this page Sep 23, 2019 · 2 revisions

Run WIlsON in RStudio

The WIlsON-App relies a lot on functionality from the WIlsON R package. Before using the app, make sure to install the package, e.g. with

install.packages("BiocManager")
BiocManager::install("wilson")

Now either clone the WIlsON apps repository and use shiny::runApp():

# Switch with setwd into the main folder e.g. wilson-apps.
setwd('yourPath'/wilson-apps)
# Use runApp to run the desired app. E.g. for wilson-basic
shiny::runApp("wilson-basic/")

Or use shiny::runUrl():

shiny::runUrl("https://github.molgen.mpg.de/loosolab/wilson-apps/archive/master.zip", subdir = "/wilson-basic")

Note In case you are on a Windows-based system, Rtools is needed for downloading plots. Make sure to add Rtools to Systempath during installation.

Using custom data

Add you custom data files into the wilson-basic/data folder. After restarting the app, the new dataset can be selected from the apps drop down menue in the feature selection pane.

You can’t perform that action at this time.